Interaction Analysis Toolbox for MATLAB
A MATLAB implementation of the interaction analysis toolbox from image data can be downloaded here. The toolbox was written by Jo Helmuth as part of his PhD project at the MOSAIC Group:
J. A. Helmuth. Computational Methods for Analyzing and Simulating Intra-Cellular Transport Processes. PhD thesis, Diss. ETH No. 19190, ETH Zürich, 2010. (PDF)
The method and the statistical framework which are implemented in this toolbox are described in the following publication:
J. A. Helmuth, G. Paul, and I. F. Sbalzarini. Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images. BMC Bioinformatics, 11:372, 2010. (PDF)
In order to ensure financial support for our project and allow further development of this software, please cite above publications in all your documents and manuscripts that made use of this software. Thanks a lot!
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