Other Publications

Other Publications

I. F. Sbalzarini, S. Schneider, and J. Cardinale. Particle methods enable fast and simple approximation of Sobolev gradients in image segmentation. Technical report arXiv:1403.0240, MOSAIC Group, 2014. (PDF)


O. Demirel and I. F. Sbalzarini. Balancing indivisible real-valued loads in arbitrary networks. Technical report arXiv:1308.0148, MOSAIC Group, 2013. (PDF)


I. F. Sbalzarini. Trafficking computes. Dev. Cell, 27:483, 2013. (PDF)


O. Demirel and I. F. Sbalzarini. Balanced offline allocation of weighted balls into bins. Technical report arXiv:1304.2881v1, MOSAIC Group, 2013. (PDF)


C. L. Müller and I. F. Sbalzarini. Variable-metric randomized black-box optimization over the cone of positive definite matrices. In Proc. Workshop Theory of Randomized Search Heuristics (ThRaSH), abstract 14, Lille, France, 2012. (PDF)


S. U. Stich. Convergence of local search. In Proc. Workshop Theory of Randomized Search Heuristics (ThRaSH), abstract 10, Lille, France, 2012. (PDF)


C. L. Müller. Exploring the common concepts of adaptive MCMC and Covariance Matrix Adaptation schemes. In: Theory of Evolutionary Algorithms, number 10361 of Dagstuhl Seminar Proceedings, Abstracts Collection, Schloss Dagstuhl, Leibnitz-Zentrum für Informatik, Germany, 2010. (PDF)


C. L. Müller, G. Ofenbeck, B. Baumgartner, and I. F. Sbalzarini. pCMALib – Manual for version 1.0. May 2010. (PDF)


A. Yakimovich, H. Gumpert, C. J. Burckhardt, V. A. Lütschg, A. Jurgeit, I. F. Sbalzarini, and U. F. Greber. Spatial dynamics modeling of viral infection in two-dimensional cell arrays. In 7th International Conference on Bioinformatics of Genome Regulation and Structure (BGRS), Novosibirsk, Russia, June 2010. (PDF)


T. Wlodarski, M. Hlevnjak, O. Awile, A. Krisko, I. Sbalzarini, B. Zagrovic. Studying protein‐protein interactions using computer simulations: from specific effects to protein ecology. In Proc. 3rd Adriatic Meeting on Computational Solutions in the Life Sciences, Primošten, Croatia, page 23, September 1-5 2009 (ISBN: 978-953-6690-80-0).


H. A. Zambrano, J. H. Walther, P. Koumoutsakos, and I. F. Sbalzarini. Atomistic simulations of thermophoresis in carbon nanotubes. In 5th international congress of Nano-Bio & Clean Tech, San Francisco, USA, October 2008. (PDF)


H. A. Zambrano, J. H. Walther, P. Koumoutsakos, and I. F. Sbalzarini. Atomistic simulations of thermophoretic motion of water nanodroplets in carbon nanotubes. In Proc. 21st Nordic Seminar on Computational Mechanics, Trondheim, Norway, October 2008. (PDF)


C. L. Müller, G. Paul, and I. F. Sbalzarini. Sensitivities for free: CMA-ES based sensitivity analysis. In: Abstracts of the 5th International Conference on Sensitivity Analysis of Model Output (SAMO), Budapest, Hungary, pages 123-124, 2007. (PDF)


Z. Smole, N. Nikolić, I. F. Sbalzarini, and A. Kriško. Adaptation to extreme environments – looking for the proteome patterns. In D. Babić, N. Došlić, D. Smith, S. Tomić, and K. Vlahoviček, editors, Proc. 2nd Adriatic meeting on Computational Solutions in the Life Sciences, Opatija, Croatia, page 85, 2007.


I. F. Sbalzarini. Informatik und Biologie – Eine Symbiose ermöglicht neue Entdeckungen. Vierteljahresschrift der Naturforschenden Gesellschaft in Zurich, 152(3):63-70, 2007. (invited, in German) (PDF)


I. F. Sbalzarini. Analysis, Modeling, and Simulation of Diffusion Processes in Cell Biology. PhD thesis, ETH Diss. No. 16440, ETH Zürich, 2006. (PDF)


I. F. Sbalzarini, H. Ewers, A. E. Smith, A. Helenius, P. Koumoutsakos. Heimtückische Viren auf lebenden Zellen. ETH Bulletin 298:48-50, 2005. (in German) (PDF)


I. F. Sbalzarini, A. Mezzacasa, A. Helenius, and P. Koumoutsakos. Large-Scale Simulations of Diffusion in Cell Biology, ERCIM News 59:69-70, 2004. (PDF, Software Download)


I. F. Sbalzarini, P. Koumoutsakos, A. Mezzacasa, and A. Helenius. Computing diffusion in intracellular compartments: The influence of organelle geometry, New Horizons in Molecular Sciences and Systems: An Integrated Approach, 16 - 18 October 2003, Nago City, Okinawa, Japan, page 113. (Software Download)


P. Catalano, M. Wang, G. Iaccarino, I. F. Sbalzarini, and P. Koumoutsakos. Optimization of cylinder flow control via zero net mass flux actuators, Proceedings of the CTR summer program 2002, Center for Turbulence Research, Stanford University, 2002. (PDF)


I. F. Sbalzarini, J. Theriot, and P. Koumoutsakos. Machine Learning for Biological Trajectory Classification Applications, Proceedings of the CTR summer program 2002, Center for Turbulence Research, Stanford University, 2002. (PDF)


S. Müller, I. F. Sbalzarini, I. Mezic, J. H. Walther, and P. Koumoutsakos. Evolutionary Optimization of Mixing Microdevices, NanoTech 2000, Montreux, Switzerland, 2000. (PDF)


I. F. Sbalzarini, L. K. Su, and P. Koumoutsakos. Evolutionary Optimization for Flow Experiments, CTR Annual Research Briefs 2000, Center for Turbulence Research, Stanford University, 2000. (PDF)


G.-H. Cottet, I. F. Sbalzarini, S. Müller, and P. Koumoutsakos. Optimization of trailing vortex destruction by evolution strategies, Proceedings of the CTR summer program 2000, Center for Turbulence Research, Stanford University, 2000. (PDF)


I. F. Sbalzarini, S. Müller, and P. Koumoutsakos. Multiobjective Optimization using Evolutionary Algorithms, Proceedings of the CTR summer program 2000, Center for Turbulence Research, Stanford University, 2000. (PDF)