In refereed conferences

In refereed conferences

2016


Yadira Boada, Alejandro Vignoni, G. Reynoso-Meza, Jesús Picó Parameter identification in synthetic biological circuits using multi-objective optimization IFAC-PapersOnLine, 49(26) 77-82 (2016).


Enric Picó-Marco, Yadira Boada, Jesús Picó, Alejandro Vignoni Contractivity of a genetic circuit with internal feedback and cell-to-cell communication IFAC-PapersOnLine, 49(26) 213-218 (2016).


Yadira Boada, J. L. Pitarch, Alejandro Vignoni, G. Reynoso-Meza, Jesús Picó Optimization Alternatives for Robust Model-based Design of Synthetic Biological Circuits IFAC-PapersOnLine, 49(7) 821-826 (2016).


2015


S. Karol, P. Incardona, Y. Afshar, I. F. Sbalzarini and J Castrillón. Towards a Next-Generation Parallel Particle-Mesh Language. In Proc. Workshop DSLDI, 29th European Conference on Object-Oriented Programming (ECOOP), Prague, Czech Republic, 2015. (paper acceptance rate: 31/136). (PDF from ArXiv)


2014


Y. Gong and I. F. Sbalzarini. Image enhancement by gradient distribution specification. In C. V. Jawahar and S. Shan, editors, Computer Vision – ACCV 2014 Workshops, Revised Selected Papers, Part II, volume 9009 of Lect. Notes Comput. Sci., pages 47–62, Singapore, November 2014. Springer. (Paper PDF, Supplementary Material ZIP, Talk Slides PDF, MATLAB Software Download, ImageJ/Fiji Software Download)


J. Asmus, D. Borchmann, I. F. Sbalzarini, and D. Walther. Towards an FCA-based recommender system for black-box optimization. In Proc.\ 3rd Intl. Workshop "What can FCA do for Artificial Intelligence?", co-located with the European Conference on Artificial Intelligence (ECAI 2014), pages 35–42, Prague, Czech Republic, 2014. (PDF)


Ö. Demirel, I. Smal, W. J. Niessen, E. Meijering, and I. F. Sbalzarini. An adaptive distributed resampling algorithm with non-proportional allocation. In Proc. ICASSP, IEEE Intl. Conf. Acoustics, Speech, and Signal Processing, pages 1635–1639, Florence, Italy, May 2014. IEEE. (PDF, Software Download)


X. Xiao and I. F. Sbalzarini. Globally optimal geometric segmentation of filaments. In Proc. IEEE Intl. Symposium Biomedical Imaging (ISBI), Beijing, China, May 2014. IEEE. (PDF)


Ö. Demirel, I. Smal, W. J. Niessen, E. Meijering, and I. F. Sbalzarini. Piecewise constant sequential importance sampling for fast particle filtering. In Proc. 10th IET Conf. Data Fusion & Target Tracking, Liverpool, UK, April 30 2014. IET. (PDF, Software Download)


Ö. Demirel, I. Smal, W. J. Niessen, E. Meijering, and I. F. Sbalzarini. PPF – A parallel particle filtering library. In Proc. 10th IET Conf. Data Fusion & Target Tracking, Liverpool, UK, April 30 2014. IET. (PDF, Software Download)


2013


Y. Gong and I. F. Sbalzarini. Local weighted Gaussian curvature for image processing. In Proc. IEEE Intl. Conf. Image Process. (ICIP), pages 534–538, Melbourne, Australia, September 15–18 2013. IEEE. (PDF)


O. Awile, M. Mitrovic, S. Reboux, and I. F. Sbalzarini. A domain-specific programming language for particle simulations on distributed-memory parallel computers. In Proc. III Intl. Conf. Particle-based Methods (PARTICLES), paper p52, Stuttgart, Germany, 2013. (PDF, Abstract PDF)


2012


S. U. Stich and C. L. Müller. On spectral invariance of Randomized Hessian and Covariance Matrix Adaptation Schemes. In Proc. Parallel Problem Solving From Nature (PPSN), Taormina, Italy, September 2012. (PDF)


I. F. Sbalzarini, C. Häcki, and S. Reboux. Anisotropic kernels for self-organizing Lagrangian particles. In IUTAM Symposium on Particle Methods in Fluid Mechanics, Copenhagen, Denmark, 2012. (PDF)


I. F. Sbalzarini. Image-based systems biology: Modeling and simulation in image-derived geometries. In Workshop on Image-based Systems Biology, German Conference on Bioinformatics (GCB), Jena, Germany, September 2012. (PDF)


O. Awile, M. Mitrović, and I. F. Sbalzarini. PPM: A scalable software framework for parallel particle-mesh simulations. In Proc. PDEsoft, Workshop on PDE Software Frameworks, Münster, Germany, June 18–20 2012. (PDF)


Y. Gong, G. Paul, and I. F. Sbalzarini. Coupled signed-distance functions for implicit surface reconstruction. In Proc. IEEE Intl. Symposium Biomedical Imaging (ISBI), pages 1000–1003, Barcelona, Spain, May 2012. (PDF) Best paper award.


2011


G. Paul, J. Cardinale, and I. F. Sbalzarini. An alternating split Bregman algorithm for multi-region segmentation. In Proc. 45th IEEE Asilomar Conf. Signals, Systems, and Computers, pages 426–430, Asilomar, CA, USA, 2011. Invited. (PDF)


C. L. Müller and I. F. Sbalzarini. Gaussian Adaptation for robust design centering. In Evolutionary and deterministic methods for design, optimization and control, Proc. EuroGen, pages 736–742, Capua, Italy, September 14–16 2011. (PDF, Software Download)


G. Paul, C. L. Müller, and I. F. Sbalzarini. Sensitivity analysis from evolutionary algorithm search paths. In Proc. EVOLVE, Workshop on Probability, Set Oriented Numerics and Evolutionary Computation, Luxembourg, May 2011. (PDF)


C. L. Müller. Continuous black-box optimization in linearly constrained domains using efficient Gibbs sampling. In Proc. EVOLVE, Workshop on Probability, Set Oriented Numerics and Evolutionary Computation, Luxembourg, May 2011. (PDF)


O. Demirel, B. Schrader, and I. F. Sbalzarini. A parallel particle method for solving the EEG source localization forward problem. In Proc. 6th Intl. Symp. Health Informatics and Bioinformatics (HIBIT), pages 154–158, Izmir, Turkey, May 2011. (PDF)


C. L. Müller and I. F. Sbalzarini. Global characterization of the CEC 2005 fitness landscapes using fitness-distance analysis. In Proc. EvoStar, volume 6624 of Leture Notes in Computer Science, pages 294–303, Torino, Italy, April 2011. Springer. (PDF)


C. L. Müller and I. F. Sbalzarini. A conjecture about an upper bound of the RMSD between linear chains. In Proc. EuroCG, 27th European Workshop on Computational Geometry, pages 31–34, Morschach, Switzerland, March 2011. (PDF)


2010


R. Ramaswamy and I. F. Sbalzarini. Fast exact stochastic simulation algorithms using partial propensities. In Proc. ICNAAM, Numerical Analysis and Applied Mathematics, International Conference, pages 1338–1341, Rhodes, Greece, September 2010. AIP. (PDF, Software Download)


O. Awile, O. Demirel, and I. F. Sbalzarini. Toward an object-oriented core of the PPM library. In Proc. ICNAAM, Numerical Analysis and Applied Mathematics, International Conference, pages 1313–1316, Rhodes, Greece, September 2010. AIP. (PDF, Software Download)


B. Schrader, S. Reboux, and I. F. Sbalzarini. Discretization-Corrected PSE Operators for Particle Methods. In Proc. 8th Euromech Fluid Mechanics Conference (EFMC8), Bad Reichenhall, Germany, September 2010. (PDF)


C. L. Müller and I. F. Sbalzarini. Gaussian Adaptation as a unifying framework for continuous black-box optimization and adaptive Monte Carlo sampling. In Proc. IEEE Congress on Evolutionary Computation (CEC), pages 2594–2601, Barcelona, Spain, July 2010. (PDF, Software Download)


C. L. Müller and I. F. Sbalzarini. Gaussian adaptation revisited — an entropic view on covariance matrix adaptation. In Proc. EvoStar, volume 6024 of Lecture Notes in Computer Science, pages 432–441, Istanbul, Turkey, April 2010. Springer. (PDF, Software Download) Best paper award.


2009


J. A. Helmuth and I. F. Sbalzarini. Deconvolving active contours for fluorescence microscopy images. In Proc. Intl. Symp. Visual Computing (ISVC), volume 5875 of Lecture Notes in Computer Science, pages 544–553, Las Vegas, USA, November 2009. Springer. (PDF, Software Download, 3D ITK implementation, ImageJ/Fiji plugin Download)


C. L. Müller and I. F. Sbalzarini. A tunable real-world multi-funnel benchmark problem for evolutionary optimization (and why parallel island models might remedy the failure of CMA-ES on it). In Proc. Intl. Joint Conf. Computational Intelligence (IJCCI), pages 248–253, Funchal, Madeira, Portugal, October 5–7 2009. INSTICC Press. (PDF, Software Download)


C. L. Müller, B. Baumgartner, G. Ofenbeck, B. Schrader, and I. F. Sbalzarini. pCMALib: a parallel FORTRAN 90 library for the evolution strategy with covariance matrix adaptation. In Proc. ACM Genetic and Evolutionary Computation Conference (GECCO’09), Montreal, Canada, July 2009. (PDF, Software Download)


J. Cardinale, A. Rauch, Y. Barral, G. Székely, and I. F. Sbalzarini. Bayesian image analysis with on-line confidence estimates and its application to microtubule tracking. In Proc. IEEE Intl. Symposium Biomedical Imaging (ISBI), pages 1091-1094, Boston, USA, June 2009. (PDF, Software Download)


C. L. Müller, B. Baumgartner, and I. F. Sbalzarini. Particle swarm CMA evolution strategy for the optimization of multi-funnel landscapes. In Proc. IEEE Congress on Evolutionary Computation (CEC), pages 2685-2692, Trondheim, Norway, May 2009. (PDF, Software Download)


2007


J. H. Walther and I. F. Sbalzarini. Large-scale parallel discrete element simulations of granular flow. In Proceedings of the International Conference on Discrete Element Modelling (DEM07), Brisbane, Australia, 2007. (PDF)


A. Tušek, C. L. Müller, J. Supper, A. Zell, Ž. Kurtanjek, and I. F. Sbalzarini. Systems biology markup language: Case study of T-cell signal transduction network. In Proceedings of the 29th International Conference on Information Technology Interfaces (ITI07), pages 651–656. IEEE, 2007. (PDF) Erratum at http://iti.srce.hr/html/erratum2007.html


2001


S. D. Mueller, I. F. Sbalzarini, J. H. Walther, and P. D. Koumoutsakos. Evolution Strategies for the Optimization of Microdevices, Proceedings of the Congress on Evolutionary Computation (CEC 2001), pp. 302-309, 2001. (PDF)


I. F. Sbalzarini, S. D. Mueller, P. Koumoutsakos, and G.-H. Cottet. Evolution Strategies for Computational and Experimental Fluid Dynamics Applications. L. Spector, E. Goodman, A. Wu, W.B. Langdon, H.-M. Voigt, M. Gen, S. Sen, M. Dorigo, S. Pezeshk, M. Garzon, and E. Burke, editors. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2001), Morgan Kaufmann Publishers, San Francisco, CA, 2001. (PDF)